LIST: http://packages.debian.org/stable/
- math; example: http://packages.debian.org/stable/math/admesh; a tool for processing triangulated solid meshes (repair)
- science:
- Quantum Chemistry:
- abinit: http://packages.debian.org/stable/science/abinit; http://www.abinit.org/
- avogadro (1.0.1-3+b1); Molecular Graphics and Modelling System
- ballview (1.3.2-2+b2); A free molecular modeling and molecular graphics tool
- gabedit (2.2.12-1)
- graphical user interface to Ab Initio packages
- gausssum (2.2.4-1)
- parse and display Gaussian, GAMESS, and etc's output
- gdpc (2.2.5-1)
- visualiser of molecular dynamic simulations
- gromacs (4.0.7-3) Molecular dynamics simulator, with building and analysis tools;see also other packages gromacs-xxx
- mpqc (2.3.1-6)The Massively Parallel Quantum Chemistry Program; mpqc-openmpi (2.3.1-6)The Massively Parallel Quantum Chemistry Program (OpenMPI Version); mpqc-support (2.3.1-6), Support programs and tools for MPQC
- psi3 (3.4.0-2)
- Quantum Chemical Program Suite
- pymol (1.2r2-1.1+b1)
- Molecular Graphics System
- rasmol (2.7.5-1)
- Visualize biological macromolecules
- viewmol (2.4.1-15+b1)
- A graphical front end for computational chemistry programs.
- METApackage: http://packages.debian.org/stable/science/science-chemistry
- Brain
- ants (1.9+svn532-5+b1 [armel, mips], 1.9+svn532-5 [amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mipsel, powerpc, s390, sparc]); advanced normalization tools for brain and image analysis
- METApackage: http://packages.debian.org/stable/science/science-neuroscience-cognitive
- Image
- imagej (1.44c-3); Image processing program inspired by NIH Image for the Macintosh
- METApackage: science-imageanalysis (0.12)
- FDTD simulation
- meep (1.1.1-6); software package for FDTD simulation; meep-mpi (1.1.1-6)
- software package for FDTD simulation, parallel (mpich) version; meep-mpich (1.1.1-9); software package for FDTD simulation, parallel (mpich) version; meep-openmpi (1.1.1-7); software package for FDTD simulation, parallel (OpenMPI) version
- tessa (0.3.1-4+b4); simulation of 3D optical systems with the FDTD method; tessa-mpi (0.3.1-4+b4); simulation of 3D optical systems using FDTD on LAM-MPI clusters
