 | 3D Slicer (MIT AI Lab; Surgical Planning Lab, Brigham and Women's Hospital) | |
| 3DViewnix (The University of Pennsylvania) | ||
| ACTIV 2000 (Neuroradiology Dpt, C.H.U. de Bicêtre) | ||
| AFNI | |
 | AIR 5.0 (Automated Image Registration) | |
| AMIDE (Amide's a Medical Image Data Examiner) | ||
| Amira* (Visual Concepts GmbH) | ||
| analySIS® (Soft Imaging System) | ||
| Analyze* (Mayo Clinic) | ||
| Anatomist (Neurospin, I2BM, CEA) | |
| Atrophy Simulation Package (SBIA Radiology, University of Pennsylvania) | ||
| Autoaligner (Bitplane Inc.) | ||
| AutoSPM (Imagilys) | ||
| b3d (Center for Neuroscience, University of California, Davis) | ||
| BAMM (University of Cambridge, King's College London and the Wellcome Trust) | |
| bioelectromagnetism (matlab tools for eeg/meg/mri) | ||
| BIRN Human Imaging Database (HID) (Biomedical Informatics Research Network) | ||
| Blox (Kennedy Krieger Institute & Johns Hopkins Hospital) | ||
| Brain Atlas for Functional Imaging (Theime Medical Publishers) | |
| BrainGraph Editor 1.0 Beta (The BrainGraph Editor 1.0 Beta is a JAVA application designed to create taxonomies or hierarchies.) | ||
| Brain Image (Stanford Psychiatry Neuroimaging Laboratory) | |
| BrainInfo (University of Washington, Seattle) | ||
| BrainMaps.org (High-Resolution Brain Maps and Brain Atlases) | |
| BRAINS (Brain Research: Analysis of Images, Networks, and Systems) (Iowa Mental Helath Clinical Research Center) | |
| BrainStorm (University of Southern California; CNRS LENA Paris; Los Alamos National Lab.) | ||
| BrainVISA (IFR 49 Paris/I2BM CEA) | |
| BrainVoyager (Brain Innovation B.V.) | |
| Brede Toolbox (IMM, Techical University of Denmark) | ||
| btrack (National Center for Microscopy and Imaging Research) | |
| BYU2Vox (University of North Carolina at Chapel Hill, Psychiatry and computer sciences departments) | ||
| Camino (Department of Computer Science, University College London) | ||
| cardviews (Center for Morphometric Analysis, Massachusetts General Hospital) | |
| | CARET (Washington University in St. Louis School of Medicine) |
| CATNAP (Johns Hopkins University School of Medicine) | ||
| CellProfiler cell image analysis software (Whitehead Institute & MIT) | ||
| COMKAT: Compartment Model Kinetic Analysis Tool (University Hospitals of Cleveland) | ||
| Conexus (Center for Neuroscience, University of California Davis) | |
| Corner_Cube (University of Minnesota) | |
| | DC Harvester* (fMRI Data Center, Dartmouth College) |
| DCMTK (OFFIS DICOM Toolkit) | ||
| DCSearch (fMRI Data Center, Dartmouth College) | ||
| DCViewer (fMRI Data Center, Dartmouth College) | ||
| Dend (National Center for Microscopy and Imaging Research) | |
| DICOMscope (DICOM Viewer) | ||
| DicomWorks (Universities of Lille and Lyon, France) | ||
| diffusion_smoothing_tool (Draper Lab & MGH) | ||
| diffusion TENSOR Visualizer (Image Computing & Analysis Lab., Radiology, The Univ. of Tokyo Hospital) | ||
| DPTools (Neuroradiology Dpt, C.H.U. de Bicêtre) | ||
| DTI Gradient Table Creator (F.M. Kirby Research Center, Kennedy Krieger Institute, Johns Hopkins University) | ||
| DtiStudio (Laboratory of Brain Anatomical MRI, Johns Hopkins Radiology) | ||
| DTI Track 2005 (INRIA Sophia Antipolis, France) | ||
| Edgewarp3D* (The University of Michigan/Visible Human Project) | ||
| EM3D (Uel J. McMahan Laboratory, Stanford University, Dept. of Neurobiology, Dept. of Structural Biology) | |
| EMS (Expectation-Maximization Segmentation) (Medical Image Computing, Leuven, Belgium) | ||
| EvIdent(r) (National Research Council, Institute for Biodiagnostics) | ||
| ezDICOM (University of Nottingham) | ||
| FACT (Interdisciplinary MRI/MRS Lab, National Taiwan University) | ||
| FIASCO (Functional Image Analysis Software Computational Olio) (CMU Statistics Department) | ||
| Fiber Tracking (University of North Carolina at Chapel Hill, Psychiatry and computer sciences departments) | ||
| Fiber Viewer (UNC at Chapel Hill, Psychiatry and computer sciences departments) | ||
| Fido (National Center for Microscopy and Imaging Research) | |
| FilamentTracer (Bitplane Inc.) | ||
| FisWidgets (University of Pittsburgh) | |
| fMRIstat (Montreal Neurological Institute ) | ||
| form*Z* (auto*des*sys) | ||
| Free-D (AMIB, NOPA, INRA Jouy-en-Josas, France) | ||
| | FreeSurfer (NMR Center, Massachusetts General Hospital) |
| FSL - The FMRIB Software Library (FMRIB, Oxford University) | |
| geWorkbench (Center for Computational Biology and Bioinformatics, Columbia University) | ||
| Gimp* (Peter Mattis and Spencer Kimball) | ||
| gpetview (Gtk-base Analyze image viewer) | ||
| Gradient non-linearity distortion correction (Martinos Center, MGH, Boston) | ||
| Group ICA Toolbox (GIFT and EEGIFT) (The MIND Research Network) | |
| HAMMER (SBIA, Department of Radiology, Upenn ) | ||
| Head Circumference (University of North Carolina at Chapel Hill, Psychiatry and computer sciences departments) | ||
| IHCorr (IDeA Lab, Center for Neuroscience, UC Davis) | ||
| iiV (internet image Viewer) (Cognitive Neuroimaging Unit, VA Medical Center, University of Minnesota, Minneapolis) | |
| ImageJ (Research Services Branch, NIMH) | ||
| ImageMagick* (ImageMagick Studio LLC) | ||
| Image-Pro Plus 5.0 (Media Cybernetics, Inc.) | ||
| ImageTrak (Fluorescence image visualization and analysis for Macintosh OS X) | ||
| Imaris (Bitplane Inc.) | ||
| ImarisColoc (Bitplane Inc.) | ||
| Imaris InPress (Bitplane Inc.) | ||
| ImarisMeasurementPro (Bitplane Inc.) | ||
| ImarisTrack (Bitplane Inc.) | ||
| ImarisXT (Bitplane Inc.) | ||
| Imconverter (University of North Carolina at Chapel Hill, Psychiatry and computer sciences departments) | ||
| Imread (University of Colorado Health Sciences Center) | ||
| InsightSNAP (Penn Image Computing and Science Lab, University of Pennsylvania, CS dept UNC Chapel Hill) | ||
| Intensity Rescaler (University of North Carolina at Chapel Hill, Psychiatry and computer sciences departments) | ||
| Intramodal registration | ||
| IrfanView (by Irfan Skiljan) | ||
| ISI-Distance - Measure for Spike Train Synchrony (Institute for Nonlinear Science, University of California San Diego) | ||
| ITK (Insight Segmentation and Registration Toolkit) | ||
| JDTI (Duke University Medical Center) | ||
| Jim (Xinapse Systems) | |
| JIV (Java Image Viewer) (A 3D Image Data Visualization and Comparison Tool) | ||
| JViewer (A Java-based 2D and 3D image viewer) | ||
| L-Measure (Krasnow Institute, George Mason university) | ||
| L-Neuron (Krasnow Institute, George Mason University) | ||
| LONI Debabeler (The LONI Debabeler manages the conversion of imaging data between multiple file fomats) | |
| LONI De-Identification Debablet (The LONI Debablet de-identifies medical image files.) | |
| LONI ICE (Generates seed points for image processing applications) | |
| LONI Inspector (The LONI Inspector is an application for displaying, searching, comparing, and exporting metadata.) | |
| LONI Pipeline (Laboratory of Neuro Imaging, UCLA) | ||
| LONI Visualization Environment (LOVE) | |
| LORETA (low resolution brain electromagnetic tomography) (The KEY Institute for Brain-Mind Research, University Hospital of Psychiatry, Zurich, Switzerland) | ||
| Lyngby (Matlab functional neuroimaging analysis toolbox) | |
| match-colors (Center for Neuroscience, University of California, Davis) | |
| MATITK (Call ITK from MATLAB) | ||
| MedINRIA (Asclepios Research Team, INRIA Sophia Antipolis, France) | |
| MEDx* (Sensor Systems, Inc.) | ||
| MeVisLab* (MeVis) | ||
| MINC - core (Medical Image NetCDF) | |
| MINC - EMMA (A MATLAB interface for MINC) | ||
| MINC - mni_autoreg (A highly customisable Linear and Non-Linear registration Package) | ||
| MINC - N3 (An automated tool for correction of intensity nonuniformity in MRI data) | ||
| MINC - volume_io (A simplified API for the MINC file format) | ||
| MIPAV (Medical Image Processing, Analysis and Visualization - NIH) | |
| MIView (gbooksoft.com) | |
| MOUSE BIRN ATLASING TOOLKIT (MBAT) 2.0 Beta (This is a collaborative effort of six laboratories. See other information section below for detail.) | ||
| Mouse Brain Atlas Web References (The Mouse Brain Library) | |
| mri3dX* (Aston University School of Life and Health Science) | ||
| MRIcro (University of South Carolina) | ||
| mri_toolbox (matlab functions for Analyze 7.5) | ||
| MRIVIEW (Biophysics Group (P-21), Los Alamos National Laboratory ) | |
| MRI Watcher (University of North Carolina at Chapel Hill, Psychiatry and computer sciences departments) | ||
| NeuroLens (A.A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital) | |
| Neurolucida (System for neuron tracing, brain mapping and neuroImaging) | ||
| NeuroServ (The MITRE Corporation) | |
| NeuroTerrain Atlas Server (Laboratory for Bioimaging & Anatomical Informatics, Dept. Neurobio. & Anat., Drexel U. Coll. of Med.) | |
| NeuroTerrain NetOStat Atlas Browser (+ NT-SDK) (Laboratory for Bioimaging & Anatomical Informatics, Dept. Neurobio. & Anat., Drexel U. Coll. of Med.) | |
| NIH Image (Research Services Branch, NIMH) | ||
| NIS (NeuroImaging Statistics) (University of Pittsburgh) | ||
| Non-linear normalization of MRI brain scans | ||
| Northern Eclipse 6.0 | ||
| NPAIRS (University of Minnesota) | |
| NVM (Neuromorphometrics) | ||
| Olfactory Glomerular Response Mapping (University of California, Irvine) | |
| OsiriX | ||
| Partial Least Squares GUI for PET, fMRI & EEG/MEG (Rotman Res Inst - Baycrest Centre, Univ of Toronto) | |
| PMOD (PMOD Technologies) | |
| PV-Wave* (Visual Numerics) | ||
| RAVENS (Regional volumetric analysis of brain images) | ||
| Reconstruct (Boston University and Medical College of Georgia) | ||
| RView | |
| scanSTAT (Mark Cohen) | ||
| Scion Image* (Scion Corporation) | ||
| seg (Center for Neuroscience, University of California, Davis) | |
| ShapeLogic (Sami Badawi) | ||
| SHIVA (Laboratory of Neuro Imaging, UCLA) | ||
| siViewer (Soft Imaging System) | ||
| Skandha4 and Brain Mapper (University of Washington) | |
| SnPM - Statistical Nonparametric Mapping (Department of Biostatistics, University of Michigan) | |
| SPM5 (Wellcome Department of Imaging Neuroscience, 12 Queen Square, London WC1N 3AR, UK.) | |
| StackVis (Center for Neuroscience, University of California, Davis) | |
| STASSIS (International Center for Neurological Restoration) | ||
| Statistically-based Simulation of Deformations (SBIA, Department of Radiology, University of Pennsylvania) | ||
| Stereo Investigator (Stereology System for brightfield, fluorescence and confocal microscopy) | ||
| Stimulate (CMRR - University of Minnesota) | ||
| STRFPAK (Theunissen Lab and Gallant Lab, UC-Berkeley) | |
| stroketool (Digital Image Solutions) | ||
| stroketool-CT (Digital Image Solutions) | ||
| SuMS (Washington University School of Medicine) | |
| SureFit (Washington University in St. Louis School of Medicine) | |
| Surface-Based Atlases (Washington University School of Medicine) | |
| SurfRelax (Software for surface analysis; Biomedicon/New York University) | ||
| Synu (National Center for Microscopy and Imaging Research) | |
| Talairach Daemon (Research Imaging Center, UTHSC San Antonio) | |
| TetSplit (SBIA, Department of Radiology, Upenn) | ||
| TOPPCAT (Duke University Medical Center) | ||
| Valmet (University of North Carolina at Chapel Hill, Psychiatry and computer sciences departments) | ||
| VA_SLICER (University of Minnesota) | |
| Videoscribbler (Live video stereology overlay for Macintosh) | ||
| ViPAR (Image Analysis and Communications Lab (IACL), Johns Hopkins University ) | |
| VOLUME-ONE (VOLUME-ONE developers group) | ||
| | VoxBo (Center for Functional Neuroimaging, University of Pennsylvania) |
| Voxtrace (National Center for Microscopy and Imaging Research) | |
| VTK CISG Registration Toolkit (CISG Guy´s Hospital London, King´s College London) | ||
| VVNT (Medical Imaging Solutions) | ||
| Wavelet Analysis of Image Registrattion (WAIR) | |
| | WFU_BPM (Advanced Neuroscience Imaging Research Core, Wake Forest University Baptist Medical Center ) |
| WFU_PickAtlas (Advanced Neuroscience Imaging Research Core, Wake Forest University Baptist Medical Center) | |
| XNAT (Washington University School of Medicine) | ||
| XnView (Gougelet Pierre) | ||
| xv* (John Bradley) | ||
| xvol (Center for Morphometric Analysis, Massachusetts General Hospital) | |
| ZFIQ (Center for Biomedical Informatics, TMHRI-Weill Cornell) |
----------
ref.
http://www.cma.mgh.harvard.edu/iatr/display.php?spec=all
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