Linux, Debian 6, some scientific packages, quantum chemistry, molecule,brain MRI, image processing, FDTD

LIST: http://packages.debian.org/stable/

• math; example: http://packages.debian.org/stable/math/admesh; a tool for processing triangulated solid meshes (repair)
• science: 
•  Quantum Chemistry:
• abinit: http://packages.debian.org/stable/science/abinit; http://www.abinit.org/
• avogadro (1.0.1-3+b1); Molecular Graphics and Modelling System
• ballview (1.3.2-2+b2); A free molecular modeling and molecular graphics tool
•  gabedit (2.2.12-1)
  graphical user interface to Ab Initio packages
•  gausssum (2.2.4-1)
  parse and display Gaussian, GAMESS, and etc's output
•  gdpc (2.2.5-1)
  visualiser of molecular dynamic simulations
•  gromacs (4.0.7-3) Molecular dynamics simulator, with building and analysis tools;see also other packages gromacs-xxx
• mpqc (2.3.1-6)The Massively Parallel Quantum Chemistry Program; mpqc-openmpi (2.3.1-6)The Massively Parallel Quantum Chemistry Program (OpenMPI Version); mpqc-support (2.3.1-6), Support programs and tools for MPQC 
•  psi3 (3.4.0-2)
  Quantum Chemical Program Suite
•  pymol (1.2r2-1.1+b1)
  Molecular Graphics System
•  rasmol (2.7.5-1)
  Visualize biological macromolecules
•   viewmol (2.4.1-15+b1)
  A graphical front end for computational chemistry programs.
•  
• METApackage: http://packages.debian.org/stable/science/science-chemistry

•  Brain
• ants (1.9+svn532-5+b1 [armel, mips], 1.9+svn532-5 [amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mipsel, powerpc, s390, sparc]); advanced normalization tools for brain and image analysis
• METApackage: http://packages.debian.org/stable/science/science-neuroscience-cognitive
• Image
• imagej (1.44c-3); Image processing program inspired by NIH Image for the Macintosh
• METApackage: science-imageanalysis (0.12)
• FDTD simulation
•  meep (1.1.1-6); software package for FDTD simulation; meep-mpi (1.1.1-6)
  software package for FDTD simulation, parallel (mpich) version; meep-mpich (1.1.1-9); software package for FDTD simulation, parallel (mpich) version; meep-openmpi (1.1.1-7); software package for FDTD simulation, parallel (OpenMPI) version  
•  tessa (0.3.1-4+b4); simulation of 3D optical systems with the FDTD method; tessa-mpi (0.3.1-4+b4); simulation of 3D optical systems using FDTD on LAM-MPI clusters

others:

• http://packages.debian.org/nwchem
• http://packages.debian.org/search?keywords=cp2k
• http://packages.debian.org/search?keywords=openbabel